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Monday, February 12, 2018

Inout Scripts™ :: Tell the Truth about World’s Leading Inspired Clone Scripts and Mobile Apps


I purchased Inout Spider Script ultimate edition for 2950 USD and Inout Search engine v8 together with addons for $1070 18 months ago, but they did not work. They had not get it fixed, so they suggested reinstalling it for another $80. I did not agree, since they just wanted to reinstall it without revision.

Finally, they said they could install Nutch in place of the Inout Spider. The Nesote charged me $480 for the installation Nutch and integration with Inout Scripts search engine v8.

They told me they were working perfect.

To my surprise, the Nutch just had 6 GB sample data and di not increase in the last 4 months. Again, they took the cash and left me nothing working. They said everything was working.

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1.      I purchased this inout script one year ago, but I had to give up finally.  Why?
2.      There are 8 bugs and 23 warnings by code checking.
3.      The Cronjob data had never been renewed.
4.      The database was attacked 3 times.
5.      The technique support never solved the issues.
6.      They always blamed the servers, even though the servers were properly set up, and did not have errors by third party organization.
7.      The site and its owner would be sued by vendors at any time. It was a potential loss of huge money.


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Friday, February 9, 2018

Isolating DNA fragments


Materials:
0.8 % agarose gel in 1x TAE
Digested DNA
Glass Milk
NaI solution
New Wash

Procedure:
1) Run digested DNA out on agarose gel slowly (70 V on BioRad gel)
2) Use long wave UV lamp to visualize bands. Cut out band with scalpel. Cut smallest possible piece.
3) Put gel slice in an eppendorf tube and weigh to figure out volume of gel slice. (empty tube approx. 1 g).
4) Add 3 vol of NaI solution (gel slice is usually ~200 mg, therefore, add 600 ul NaI).
5) Melt gel slice in 55 degree water bath.
6) Add 5 ul glass milk and mix (vortex glass milk vigorously to resuspend before adding to DNA mx). Incubate on ice ~5 min.
7) Spin down glass milk quickly. Decant. Add 1 ml New Wash and vortex. Do a total of 3 washes.
8) Spin down hard to pellet glass milk. Aspirate off liquid and air dry.
9) Resuspend pellet in 30-50 ul TE pH 7.5. Heat at 55degrees for 5 min.
10) Spin down glass milk and save supernatant. This is your DNA.

NaI solution
Mix 90.8 g NaI and 1.5 g Na2SO3 (note: sulfite!) to a final volume of 100 ml (cover with foil while stirring, light sensitive). Filter through #1 Whatman paper add 0.5 g Na2SO3. Store in dark at 4degreesC.
New Wash for 500 ml
50% EtOH 250 ml
0.1 M NaCl 2.92 g
10 mM Tris 7.5 5 ml 1M
1 mM EDTA 1 ml 0.5 M


E. coli Transformation


Long
1) Get 200ul aliquots of E. coli (DH5a for normal transformation or DE3 for expression) from -80C freezer and let thaw on ice.
2) Add DNA
For plasmid: 1ul DNA desired
For ligation: 10ul ligation reaction
-Also include a negative control with no DNA.
3) Incubate for 30min on ice.
4) Heat shock for 90sec at 42C.
5) Incubate for 1min on ice.
6) Add 1ml LB.
7) Agitate at 37C for 45min – 2hrs (1hr is good).
8) Spin down and pour off LB leaving ~100ul.
9) Resuspend cells in the ~100ul.
10) Plate the entire suspension on appropriate prewarmed plates.
11) Incubate at 37C overnight.

Short
Note: Use for amplifying AmpR plasmids only.
1) Get 200ul aliquots of E. coli (DH5a) from -80C freezer and let thaw on ice.
2) Aliquot 50ul of cells into tubes.
3) Add 1ul DNA desired.
4) Incubate on ice 5min-30min.
5) Plate on prewarmed LB-Amp plates. (Plate the whole thing--no spinning, no nothing).
6) Incubate at 37C overnight.
Blue/White Selection
-Used for plasmids like Bluescript.
-No insert=Blue. Insert=White.
-Do long transformation of ligations basically as described above.
-While cells are agitating,
A) Spread X-Gal and IPTG on plates.
X-Gal (50mg/ml): 20ul
IPTG (1M): 10ul
B) Incubate at 37C to dry (about 30min).

E. coli Miniprep


1) Grow 2ml culture o/n.
2) Spin down. Pour off all but ~100ul of sup. Resuspend cells in the ~100ul.
3) Add 130ul P1. Resuspend.
4) Add 130ul P2. Mix immediately.
5) Add 182ul N3. Mix immediately.
6) Spin 10 min at 4C. (Removes genomic DNA and debris).
7) Transfer sup to a fresh eppendorf.
8) Add 900ul ice-cold 100% EtOH (bottom shelf in door of -20C freezer). Mix thoroughly.
9) Spin 15min at 4C. Discard sup.
10) Wash pellet once with ~400ul ice-cold 70% EtOH.
11) Dry pellet on rack or in speedy-vac.
12) Resuspend in 50ul water. Use 3-10ul for digest.

Molecular Biology Protocols Online




One-Tube Isolation of DNA from Mouse Tails
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot093534
   
   
Buffers
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.top098210
   
   
Caring for Escherichia coli
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot101337
   
   
Protein Immunodepletion and Complementation in Xenopus laevis Egg Extracts
Christopher Jenness, 

David J. Wynne, 

and Hironori Funabiki
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot097113
   
Analysis of Mitotic Checkpoint Function in Xenopus Egg Extracts
Yinghui Mao
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot099853
   
Transformation of Schizosaccharomyces pombe in a 96-Well Format
Assen Roguev, 

Jiewei Xu, 

and Nevan J. Krogan
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot091942
   
   
DNA Preparation from Schizosaccharomyces pombe
Assen Roguev, 

Jiewei Xu, 

and Nevan J. Krogan
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot091959
   
   
Preparation of Plasmid DNA by Alkaline Lysis with Sodium Dodecyl Sulfate: Maxipreps
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot093351
   
   
A Single-Step Method for the Simultaneous Preparation of DNA, RNA, and Protein from Cells and Tissues
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot093500
   
   
Gateway Recombinational Cloning
John S. Reece-Hoyes
   
and Albertha J.M. Walhout
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.top094912
   
   


Propagating Gateway Vectors

John S. Reece-Hoyes
   
and Albertha J.M. Walhout
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot094920
   
   
Generating an Open Reading Frame (ORF) Entry Clone and Destination Clone
John S. Reece-Hoyes
   
and Albertha J.M. Walhout
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot094938
   
   
Using Multisite LR Cloning to Generate a Destination Clone
John S. Reece-Hoyes
   
and Albertha J.M. Walhout
Cold Spring Harb Protoc 2018; doi:10.1101/pdb.prot094946
   
   
Preparation of DNA from Embryonic Stem Cells or Other Cultured Cells
Richard Behringer, 

Marina Gertsenstein, 

Kristina Vintersten Nagy, 

and Andras Nagy
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot092718
   
   
Analysis of DNA Methylation in Mammalian Cells
Paul M. Lizardi, 

Qin Yan, 

and Narendra Wajapeyee
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.top094821
   
   
Methylation-Specific Polymerase Chain Reaction (PCR) for Gene-Specific DNA Methylation Detection
Paul M. Lizardi, 

Qin Yan, 

and Narendra Wajapeyee
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot094847
   
   
Methyl-Cytosine-Based Immunoprecipitation for DNA Methylation Analysis
Paul M. Lizardi, 

Qin Yan, 

and Narendra Wajapeyee
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot094854
   
   
High-Throughput Deep Sequencing for Mapping Mammalian DNA Methylation
Paul M. Lizardi, 

Qin Yan, 

and Narendra Wajapeyee
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot094862
   
   
Preparation of Single-Stranded Bacteriophage M13 DNA by Precipitation with Polyethylene Glycol
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot093419
   
   
Growing Bacteriophage M13 in Liquid Culture
Michael R. Green
   
and Joseph Sambrook
Cold Spring Harb Protoc 2017; doi:10.1101/pdb.prot093435
   
   


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Tuesday, February 6, 2018

Tailed spider trapped in 100-million-year old amber offers insight in evolution

A spider-like creature bearing a long tail has been discovered in an amber from Myanmar dating back about 100 million years.
"There's been a lot of amber being produced from northern Myanmar and its interest stepped up about ten years ago when it was discovered this amber was mid-Cretaceous," said Paul Selden, a palaeontologist at the University of Kansas and an author of a paper on the ancient arachnid.
"Therefore, all the insects found in it were much older than first thought," Selden told the university in an interview.
The finding is published Monday in a paper in Nature Ecology & Evolution by an international team of researchers from the United States, China, Germany and the United Kingdom.
According to the paper, the creature shares many similarities with modern spiders including fangs, eight legs and silk-producing spinners.
Moreover, it also bears a long flagellum, or a tail, at its rear, which is not commonly seen among modern spiders.
Thought the ancient arachnid has a tiny body, only about 2.5 millimeters long, it had a tail nearly twice of its body length.
"Any sort of flagelliform appendage tends to be like an antenna," Selden said, "It's for sensing the environment. Animals that have a long whippy tail tend to have it for sensory purposes."
The tailed arachnid, named Chimerarachne after the Greek mythological Chimera, documents a key transition stage in spider evolution.
Previously, Selden and his colleagues had found similar insects without spinnerets from the much older Devonian and Permian periods.
"That's why the new one is really interesting, apart from the fact that it's much younger -- it seems to be an intermediate form," Selden said.
"In our analysis, it comes out sort of in between the older one that hadn't developed the spinneret and modern spider that has lost the tail," he added.

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